It would be unfair and inaccurate to call Notational Velocity a replacement for Yojimbo. Notational Velocity will search incrementally as you type in the main box, and if it doesn't find a matching note, it will let you create one.
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You can edit them on Windows or Linux machines synced to your Dropbox. Once you have set Notational Velocity to store your notes in individual files, you can edit them with any text editor, or within Notational Velocity itself. Thinking about getting an iPad? That's only going to make this setup even sweeter. Edit a note anywhere, and the changes are synced nearly instantly and appear everywhere. Notes on my iPhone, my iMac and my MacBook Pro. That's what Notational Velocity has achieved. Imagine if Apple had created an over-the-air method of syncing Notes and it all Just Worked. It also easily syncs via Dropbox if you follow the important configuration notes here. Notational Velocity does save notes, either in ASCII, RTF, or HTML, but with the latest version, Notational Velocity syncs with Simplenote or WriteRoom for iPhone. It took me a minute to understand why I'd want Notational Velocity, it because it sounded like yet another "everything box" like Yojimbo, which I was already using.
The app has been around for awhile ( we talked about it five years ago!) but some new features and new technologies make it well worth another look. It changed how I use my iMac, MacBookPro, and iPhone, bringing them all together in a very cool way. I had heard about Notational Velocity when Merlin Mann posted about it on 43Folders. The phrase "game changer" is no doubt cliché and overused, but every now and again it just fits.
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